We are in the midst of a migration too. As long as you have ADC up it shouldnt matter, what side the bes service account is on. Ours was on 5.5 in the begining, now its on 2003.
One thing i will state though is after you migrate boxes with bes accounts, run the dbclean util.
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Matt
Blackberry 8700c
Bes 4.1 / Exchange 2003 SP2
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