sorry for lack of updates, i have been flat out on various projects.
We havent installed any updates since installing the server (4.0), so doubt I have this update. Havent specifically checked.
However we all learnt something new - dont reboot the server unless absolutely necessary.
Apparently the 'Blackberry Controller' and 'Blackberry Dispatcher' services shouldnt be restarted unless necessary.
Basically, restarting these services forces the BES to start scanning every single mailbox, including every single folder and subfolder.
If you have large mailboxes, or alot of users, this can cause slow synchronisation, as the server is running the scans, and synchronisation takes a hit because of it.
We had restarted the server twice that morning. Synchronisation was at an all time low. alot of devices not synchronising at all (usually devices with large mailboxes)
We left it that day, the next day, everything seemed fine - synchronisation takes only a minute or so.
could be other factors, so check out this article: KB04789
Restarting the BlackBerry Enterprise Server services may cause delays in message delivery
Also check out: KB13277
might be of use